Everyone, now that I'm reading your posts, I'm feeling like a college freshman taking his first philosophy course.  Although some silly people believe that I'm an expert in Thomism, I think I'm only beginning to learn it and the other kinds of philosophy I study.  So I'm posting this article because I want you to teach me.  Do you agree with Dr. Bonnette?  Are his arguments sound in the logician's sense?  Thanks for your help.
http://www.godandscience.org/evolution/philosophy_darwinian_evolution.pdf